Index

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__init__ (antpack.LiabilitySearchTool attribute) __init__() (antpack.DNASeqTranslator method) (antpack.PairedChainAnnotator method) (antpack.SingleChainAnnotator method) (antpack.VJGeneTool method)

A

analyze_seq (antpack.LiabilitySearchTool attribute) (antpack.PairedChainAnnotator attribute) (antpack.SingleChainAnnotator attribute) analyze_seqs (antpack.PairedChainAnnotator attribute) (antpack.SingleChainAnnotator attribute)

assign_cdr_labels (antpack.PairedChainAnnotator attribute) (antpack.SingleChainAnnotator attribute) assign_vj_genes (antpack.VJGeneTool attribute)

B

build_msa (antpack.PairedChainAnnotator attribute) (antpack.SingleChainAnnotator attribute)

C

convert_sequence_to_array() (antpack.SequenceScoringTool method)

D

DNASeqTranslator (class in antpack)

G

get_diagnostic_info() (antpack.SequenceScoringTool method) get_standard_mask() (antpack.SequenceScoringTool method)

get_standard_positions() (antpack.SequenceScoringTool method) get_vj_gene_sequence (antpack.VJGeneTool attribute)

H

HumanizationTool (class in antpack)

L

LiabilitySearchTool (class in antpack)

P

PairedChainAnnotator (class in antpack)

R

retrieve_cluster() (antpack.SequenceScoringTool method), [1]

retrieve_db_dates() (antpack.VJGeneTool method)

S

score_seqs() (antpack.SequenceScoringTool method), [1] SequenceScoringTool (class in antpack), [1] SingleChainAnnotator (class in antpack)

sort_position_codes (antpack.PairedChainAnnotator attribute) (antpack.SingleChainAnnotator attribute) suggest_mutations() (antpack.HumanizationTool method)

T

translate_dna_known_rf (antpack.DNASeqTranslator attribute) translate_dna_unknown_rf (antpack.DNASeqTranslator attribute)

trim_alignment (antpack.PairedChainAnnotator attribute) (antpack.SingleChainAnnotator attribute)

V

VJGeneTool (class in antpack)