AntPack NonCommercial Use (v0.3.9 onwards)

Tools for numbering, sequence analysis and statistical modeling / ML for antibodies and TCRs using amino acid sequences.

• Installation and licensing

Using AntPack from Python, the command line or as a GUI

• AntPack command line, Python and GUI tools
• Using the GUI: a tutorial

Antibody Numbering

• How antibody numbering in AntPack works
• Antibody numbering
• Numbering example

Assigning V and J genes

• VJ gene assignment tutorial
• VJ gene assignment example

Finding developability liabilities

• Finding liabilities

Humannness scoring, generative modeling and humanization

• How humanness evaluation in AntPack works
• Scoring sequences for humanness in AntPack
• Humanizing sequences with AntPack
• Scoring and identifying problematic residues/motifs examples
• Generating new human sequences

Search and clustering of antibodies / TCRs

• Search & clustering overview
• Database search and clustering tutorial
• Clustering for small datasets and frameworks
• Some examples of clustering

Miscellaneous

• About / Contact

• Search Page